NetNGlyc protocols

NetNGlyc specifications

Information


Unique identifier OMICS_02442
Name NetNGlyc
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Ramneek Gupta <>

Additional information


Access to a standalone version available upon request. http://www.cbs.dtu.dk/cgi-bin/nph-runsafe?man=netNglyc

Information


Unique identifier OMICS_02442
Name NetNGlyc
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Amino acid sequences.
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable

Taxon


  • Primates
    • Homo sapiens

Versioning


Add your version

Documentation


Maintainer


This tool is not maintained anymore.

Additional information


Access to a standalone version available upon request. http://www.cbs.dtu.dk/cgi-bin/nph-runsafe?man=netNglyc

Publication for NetNGlyc

NetNGlyc IN pipelines

 (3)
2017
PMCID: 5425475
PMID: 28553207
DOI: 10.3389/fnsys.2017.00028

[…] sites for protein kinase c (pkc) and nine phosphorylation sites for protein kinase g (pkg) are present within intracellular domains of dm5-ht2b (figure 2). n-glycosylation sites were predicted by netnglyc 1.0 server1 and putative palmitoylation sites were predicted using gps-lipid2. putative phosphorylation sites were predicted by netphos 3.1 server3 (blom et al., 2004)., a comparison […]

2017
PMCID: 5623054
PMID: 29018364
DOI: 10.3389/fphys.2017.00744

[…] fly splice site prediction tool (http://www.fruitfly.org/seq_tools/splice.html). the intracellular and n-glycosylation sites were predicted using neyglyc 1.0 server (http://www.cbs.dtu.dk/services/netnglyc/) and the intracellular phosphorylation sites were predicted using netphos 3.1 server (http://www.cbs.dtu.dk/services/netphos/). palmitoylation of cysteine residues were predicted […]

2014
PMCID: 4066178
PMID: 24584662
DOI: 10.1007/s11033-014-3298-z

[…] motifs are also present in the two sequences. the netphos 2.0 tool [24] identified 20 putative phosphorylation sites in f1 and 28 in f2. on the basis of the consensus sequences asn-xaa-ser/thr, the netnglyc 1.0 prediction tool revealed four and three potential n-glycosylated sites in f1 and f2, respectively (fig. s1)., a search of the uniprotkb/swiss-prot database revealed that the both two new […]

NetNGlyc institution(s)
Center for Biological Sequence Analysis, Bio-Centrum Technical University of Denmark, Lyngby, Denmark
NetNGlyc funding source(s)
Supported by The Danish National Research Foundation.

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