NetOGlyc specifications

Unique identifier:
OMICS_02441
Restrictions to use:
None
Input format:
FASTA
Version:
4.0
Maintained:
Yes
Interface:
Web user interface, Application programming interface
Input data:
A set of sequences.
Computer skills:
Basic
Stability:
Stable
  • Animals
    • Homo sapiens

NetOGlyc specifications

Unique identifier:
OMICS_02441
Interface:
Command line interface
Input data:
A single sequence (just the amino acids) or a number of sequences.
Output data:
A list of potential glycosylation sites, showing their positions in the sequence and the prediction confidence scores.
Computer skills:
Advanced
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux
Version:
4.0
Requirements:
DisEMBL, NetSurfP, TMHMM
  • Animals
    • Homo sapiens

versioning

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NetOGlyc support

Documentation

Maintainer

  • Hiren Joshi <>
This tool is not maintained anymore.

Additional information

Access to a standalone version available upon request.

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Publications

Institution(s)

Copenhagen Center for Glycomics, Departments of Cellular and Molecular Medicine and School of Dentistry, University of Copenhagen, Copenhagen, Denmark; Center for Biological Sequence Analysis, Department of Systems Biology Technical University of Denmark, Lyngby, Denmark; IPATIMUP, Institute of Molecular Pathology and Immunology of the University of Porto, Porto, Portugal; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Horsholm, Denmark; Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark

Funding source(s)

Supported by Kirsten og Freddy Johansen Fonden, A.P. Moller og Hustru Chastine Mc-Kinney Mollers Fond til Almene Formaal, The Carlsberg Foundation, The Novo Nordisk Foundation, The Danish Research Councils, a programme of excellence from the University of Copenhagen, the Sino-Danish Breast Cancer Centre and The Danish National Research Foundation (DNRF107).

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