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NetPhosBac specifications

Information


Unique identifier OMICS_17916
Name NetPhosBac
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ivan Mijakovic

Publication for NetPhosBac

NetPhosBac citations

 (10)
library_books

Analysis of antibiotics resistant genes in different strains of Staphylococcus aureus

2018
Bioinformation
PMCID: 5953858
DOI: 10.6026/97320630014113

[…] SecretomeP was employed to perform non-classical and leaderless secretion of proteins. Serine and threonine phosphorylation sites in all the obtained antibiotic resistance genes were predicted using NetPhosBac 1.0 platform (http://www.cbs.dtu.dk/services/NetPhosBac/). The Serine and threonine phosphorylation sites were validated using GPS 3.0 Mac version downloaded from (http://gps.biocuckoo.org/ […]

library_books

Molecular characterization of US like and Asian non S INDEL strains of porcine epidemic diarrhea virus (PEDV) that circulated in Japan during 2013–2016 and PEDVs collected from recurrent outbreaks

2018
PMCID: 5852955
PMID: 29540176
DOI: 10.1186/s12917-018-1409-0

[…] tes were predicted using a service available on http://www.cbs.dtu.dk/services/NetNGlyc. Phosphorylation sites were predicted using the NetPhos 3.1 server (http://www.cbs.dtu.dk/services/NetPhos) and NetPhosBac 1.0 server (http://www.cbs.dtu.dk/services/NetPhosBac-1.0). Prediction of antigenic regions was performed using the EMBOSS protein analysis tool [] integrated into the Geneious software. […]

library_books

Virulence gene profiles: alpha hemolysin and clonal diversity in Staphylococcus aureus isolates from bovine clinical mastitis in China

2018
PMCID: 5834907
PMID: 29499697
DOI: 10.1186/s12917-018-1374-7

[…] es were aligned using BioEdit v7.0.9 (Micro Focus, Newbury, UK) to designate genotypes. Corresponding peptide sequences were deduced and aligned to determine the presence of amino acid substitutions. NetPhosBac 1.0 Server (http://www.cbs.dtu.dk/services/NetPhosBac-1.0) was used to predict serine and threonine phosphorylation sites in Hla peptide sequences, which were identified with non-synonymous […]

library_books

Multipronged regulatory functions of a novel endonuclease (TieA) from Helicobacter pylori

2016
Nucleic Acids Res
PMCID: 5100599
PMID: 27550181
DOI: 10.1093/nar/gkw730

[…] Many translocated bacterial proteins undergo phosphorylation by host kinases at tyrosine, threonine and serine residues (). Therefore, we assessed whether TieA could also undergo phosphorylation; Netphosbac analysis (http://www.cbs.dtu.dk/services/NetPhosBac-1.0/) illustrated that TieA protein sequence has the following serine residues: AECKSGELK, YINNSRR, RKNLSSLLY, KNLSSLLYE which could be p […]

library_books

US like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

2015
Springerplus
PMCID: 4668244
PMID: 26693114
DOI: 10.1186/s40064-015-1552-z

[…] three sites were all serine, one of few major amino acids that are capable of generating new O-linked glycosylation or phosphorylation. Netphos 2.0 server (http://www.cbs.dtu.dk/services/NetPhos) and NetPhosBac 1.0 Server (http://www.cbs.dtu.dk/services/NetPhosBac-1.0) were used for prediction of phosphorylation site. The result showed that phosphorylation was generated from serine residues at the […]

library_books

RD 1 encoded EspJ protein gets phosphorylated prior to affect the growth and intracellular survival of mycobacteria

2015
Sci Rep
PMCID: 4521147
PMID: 26228622
DOI: 10.1038/srep12717

[…] lation potential as well as putative phosphorylation sites in RD1 encoded proteins were predicted by publicly available online analysis tool (); Netphos 2.0 (http://www.cbs.dtu.dk/services/NetPhos/), NetPhosBac1 (http://www.cbs.dtu.dk/services/NetPhosBac-1.0/), DISHPHOS 1.3 (http://www.dabi.temple.edu/disphos/pred.html) and, Kinasephos 2.0 (http://kinasephos2.mbc.nctu.edu.tw/). Alignment of protei […]

Citations

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NetPhosBac institution(s)
Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark; Center for Microbial Biotechnology, Technical University of Denmark, Lyngby, Denmark; Department of Proteomics and Signal Transduction, Max-Planck-Institute for Biochemistry, Martinsried, Germany
NetPhosBac funding source(s)
This work was supported by grants from the Danish Natural Science Research Council (FNU) and Interaction Proteome, contract number: LSHG-CT-2003- 505520, European Commission FP6 Programme.

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