NetPhosYeast statistics

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NetPhosYeast specifications

Information


Unique identifier OMICS_05933
Name NetPhosYeast
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Nikolaj Blom <>

Publication for NetPhosYeast

NetPhosYeast in pipeline

2010
PMCID: 2963615
PMID: 21049050
DOI: 10.1371/journal.pone.0013606

[…] available at the center for biological sequence analysis (cbs, kgs. lyngby, denmark): protfun (version 2.2), tmhmm (version 2.0), netnes (version 1.1), signalp (version 3.0), targetp (version 1.1), netphosyeast (version 1.0), netacet (version 1.0) and yinoyang (version 1.2)., homology modeling and structure validation: sequences of pdb structures showing similarity with the brp44 and fmp43 […]


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NetPhosYeast in publications

 (10)
PMCID: 5775349
PMID: 29352143
DOI: 10.1038/s41598-018-19652-z

[…] are previously listed in the proteomic studies,. to determine potential phosphorylation sites by protein kinases, this consensus sequence for phosphorylation was screened with the help of software netphosyeast and netphos 2.0 (technical university of denmark, http://www.cbs.dtu.dk/services/netphos/), which identify potential phosphorylation sites (fig. ). a series of alanine mutants was made […]

PMCID: 5481450
PMID: 28642475
DOI: 10.1038/s41598-017-04290-8

[…] amino acids with an expected size of 46 kda, gsb1ha was detected at an apparent molecular weight of ~70 kda. gsb1 is predicted to have 21 putative phosphorylation sites by in silico analysis using netphosyeast 1.0, but the phosphatase treatment experiment suggested that the increased molecular weight of gsb1 was not attributed to phosphorylation (supplementary fig. ). the sensitivity […]

PMCID: 5602425
PMID: 28944093
DOI: 10.1080/21592799.2017.1335270

[…] analysis of variance (anova) was used, followed by post-hoc student's t-test using bonferroni's correction., identification of putative sty1p phosphorylation sites in lvs1p was performed using netphosyeast 1.0 and netphos 3.1. putative sty1p phosphorylation sites were defined as residues predicted to be phosphorylated in yeast using netphosyeast and predicted to be p38 consensus sites […]

PMCID: 5048138
PMID: 27698459
DOI: 10.1038/srep34817

[…] (ann) and support vector machines (svm) etc. some excellent webserver for phosphorylation site predictors have been constructed based on these algorithms. for example, ingrell et al. developed netphosyeast to predict yeast-specific phosphorylation site based on neural network method. lin et al. developed a rice-specific svm predictor called rice_phospho by combining amino acid occurrence […]

PMCID: 4909777
PMID: 27379142
DOI: 10.3389/fpls.2016.00862

[…] of the phosphorylation status of the purified protein, since phosphorylation has previously been shown to regulate aqp function (; ; ). interestingly, an in silico phosphorylation prediction tool netphosyeast () revealed that the n-terminal part of nbxip1;1α harbors six putative phosphorylation sites as shown in figure . probing for phosphorylation with the phostag− btl-111 confirmed […]


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NetPhosYeast institution(s)
University of Southern Denmark, Odense, Denmark

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