NetSeed statistics

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Metabolic network analysis Reverse ecology analysis

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NetSeed specifications

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Information

Unique identifier	OMICS_12612
Name	NetSeed
Interface	Web user interface
Restrictions to use	Academic or non-commercial use
Programming languages	Perl
Computer skills	Basic
Stability	Stable
Maintained	Yes

Maintainer

Elhan Borenstein <>

Publication for NetSeed

NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.

2012 Bioinformatics

PMID: 22219204

NetSeed in publication

Analysis of Microbial Functions in the Rhizosphere Using a Metabolic Network Based Framework for Metagenomics Interpretation

PMCID: 5572346

PMID: 28878756

DOI: 10.3389/fmicb.2017.01606

[…] an environment-specific network, following the procedure outlined in . similarly, a meta-network was constructed, containing all enzymatic functions annotated across the metagenomic data., using the netseed algorithm (), through its implantation in netcmpt (), an approximation of the relevant metabolic environment was retrieved for each of the five networks (meta-network and four […]

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NetSeed institution(s)

Department of Genome Sciences; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA; Santa Fe Institute, Santa Fe, NM, USA

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