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NetStruct specifications

Information


Unique identifier OMICS_15312
Name NetStruct
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.33
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Gili Greenbaum <>

Publication for NetStruct

NetStruct in publications

 (2)
PMCID: 5575265
PMID: 28851952
DOI: 10.1038/s41598-017-09748-3

[…] population structure, a principal components analysis (pca) was performed using an r package. additionally, a network-based approach was also used to infer hierarchical clustering as implemented in netstruct. the program constructs a network by connecting individuals above a genetic similarity threshold. this is followed by community detection to identify groups of individuals much more closely […]

PMCID: 5183091
PMID: 28028460
DOI: 10.7717/peerj.2764

[…] analysis of molecular variance (amova) using arlequin v.3.5.1.3 program (). population structure was explored with both model based (structure) () and distance based approaches (dapc, pop graph and netstruct) (; )., the bayesian clustering algorithm implemented in structure v2.3 () estimates the probability of genotypes being distributed into k number of clusters. simulations were run using […]


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NetStruct institution(s)
Department of Solar Energy and Environmental Physics, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Israel; Mitrani Department of Desert Ecology, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Israel; Department of Biology, Washington University, St. Louis, MO, USA; Department of Evolutionary and Environmental Ecology, University of Haifa, Haifa, Israel
NetStruct funding source(s)
This research was supported by United States-Israel Binational Science Foundation grant 2011384, ART and Amos Bouskila.

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