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chevron_left Secondary structure prediction Tertiary structure prediction Structural domain prediction chevron_right
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NetTurnP specifications

Information


Unique identifier OMICS_17954
Name NetTurnP
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Thomas Nordahl Petersen <>

Publication for NetTurnP

NetTurnP in publications

 (7)
PMCID: 4683798
PMID: 26677845
DOI: 10.1186/s12862-015-0558-z

[…] 86 % accuracy []. finally, bcl::jufo9d has a prediction accuracies of 73.2 % the secondary structure prediction, and 94.8 % for the transmembrane span prediction []. beta-turns were predicted using netturnp []. sensitivity is 76 % and specificity 79 %, respectively, in distinguishing turns from not-turns []. the protein secondary structure was established using sopma [], psipred [], pred2ary […]

PMCID: 4640708
PMID: 26555167
DOI: 10.1371/journal.pone.0141824

[…] tecpr2 amino acid exchange characterized the mutation as destabilizing (popmusic) and highly damaging (polyphen 2), whereas no effect on the secondary structure and disorder were predicted (netturnp, netsurfp, cfssp, phyre 2)., transmission electron microscopy of the spheroids revealed intraaxonal accumulations of closely packed vacuoles rimmed by two parallel membrane layers separated […]

PMCID: 3908855
PMID: 24565438
DOI: 10.1186/1477-5956-11-S1-S5

[…] and multiple alignments. coudes also utilizes secondary structure predicted by psipred [], sspro2 [], and prof []. the machine learning methods include btpred [], betatpred2 [], molebrnn [] and netturnp [], which are based on artificial neural networks (anns), kim's method based on k-nearest neighbor (knn) [], as well as support vector machines (svms) based methods, which recently […]

PMCID: 3709708
PMID: 23708094
DOI: 10.3390/ijms140610896

[…] physiological ph than acidic ph., residues such as asn, asp, gly, pro and ser tend to form turns. in this sequence, the probabilities of each residue to form turns can be predicted with the software netturnp [] and the results are shown in . at physiological ph, asp2 is negatively charged, which experiences electrostatic attraction from lys6. however, at acidic ph, asp2 is neutral. this makes […]

PMCID: 3590576
PMID: 23509793
DOI: 10.1155/2013/870372

[…] using psipred [, ] are used as input to the second structure-structure network to refine the prediction obtained from the first network. petersen et al. [] presented a neural network method called netturnp, for predicting β-turns and β-turn types. their method consists of two artificial neural network layers; they used pssms, secondary structure, and surface accessibility as input […]


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NetTurnP institution(s)
Department of Systems Biology, Center for Biological Sequence Analysis (CBS), Technical University of Denmark, Lyngby, Denmark

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