NetUTR statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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NetUTR specifications

Information


Unique identifier OMICS_17906
Name NetUTR
Interface Web user interface
Restrictions to use None
Input data A mRNA sequence.
Input format FASTA
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Soren Brunak <>

Publication for NetUTR

NetUTR in publications

 (3)
PMCID: 2952627
PMID: 20948966
DOI: 10.1371/journal.pone.0013340

[…] finder (3788 snp-transcripts, average difference 16.19%), followed by a neural network splice site prediction tool, nnsplice (3142 snp-transcripts, average difference 31.03%) and the least from netutr (1468 snp-transcripts, average difference 37.26%), based on the netgene2 splice prediction tool and trained on a data set of utr splice patterns. the distribution of these results […]

PMCID: 3098058
PMID: 20067640
DOI: 10.1186/1471-2105-11-22

[…] protein coding context []., investigation whether prediction of sss could be accomplished without relying on protein coding potential started with simple tools such as spliceview[] and genio[]. the netutr[] tool has been specifically constructed to predict sss in 5' untranslated regions (utrs), therefore addressing the problem of splicing prediction without relying on protein coding features. […]

PMCID: 1526722
PMID: 16584568
DOI: 10.1186/1745-6150-1-10

[…] more conserved as compared to other oligos, which supports our assumption of their functional importance. the tool has been shown to outperform the spliceview, genesplicer, nnsplice, genio and netutr tools for the test set of human genes. splicescan outperforms all contemporary ab initio gene structural prediction tools on the set of 5' utr gene fragments., designed methods have many […]


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NetUTR institution(s)
Center for Biological Sequence Analysis, Biocentrum-DTU, Technical University of Denmark, Lyngby, Denmark

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