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NetWalker specifications

Information


Unique identifier OMICS_08344
Name NetWalker
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained No

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Publications for NetWalker

NetWalker in publications

 (20)
PMCID: 5626774
PMID: 28974751
DOI: 10.1038/s41598-017-12849-8

[…] the drug repurposing tool - cmap, of each dataset regarding their fold change (fc). to introduce a second, independent way to prioritize the most important genes related to ipf per dataset, we used netwalker, as a random walk-based approach, to construct a second list with the same number of up and down regulated genes., we separately used the two lists of up and down regulated genes […]

PMCID: 5341430
PMID: 28270187
DOI: 10.1186/s13075-017-1252-x

[…] in 14 patients. serum or plasma samples at baseline, 26 and 52 weeks were analysed using multiplex or individual immunoassays for 41 proteins. patterns of change were analysed by clustering using netwalker 1.0, pearson coefficient and significance analysis of microarrays (sam) correction., cluster analysis, sam multiplex testing and paired comparison of individual analytes identified proteins […]

PMCID: 5537052
PMID: 28031554
DOI: 10.1038/leu.2016.376

[…] or down-regulated genes were chosen based on a p-value cut-off of 0.05. for networks, down- or up-regulated genes were used as seeds to build a coherent network using gene-connector functionality in netwalker suite()., two μg of total rna was used to synthesize cdna using superscript iii first strand synthesis kit (life technologies). q-pcrs were performed using the sybr green method […]

PMCID: 5327379
PMID: 28243334
DOI: 10.7150/jca.17521

[…] from xcms online were used to generate the cloud plot . the metabolic features that showed significant changes in the cancer cells with ak2 or pgk1 knockdown were used to generate heat maps with the netwalker 1.0 (https://netwalkersuite.org/)., adenylate kinases (aks) are a set of enzymes that catalyze the nucleotide phosphoryl exchange reaction. among them, ak2 is a metabolic enzyme expressed […]

PMCID: 5344721
PMID: 27669434
DOI: 10.1038/onc.2016.308

[…] lung cancer cells transfected with mir-193a-3p was determined relative to the control mirna, and a network of the top 300 downregulated interactions was determined after edge flux analysis using netwalker(, ) (http://www.netwalker suite.org). to determine the potential for mir-193a-3p to regulate the resulting network through kras, we intersected the network with that of our kras signature. […]


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NetWalker institution(s)
Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA

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