Biological network analysis software tools | Biological pathway

Networks are becoming increasingly important to understand the relationships between genotype and phenotype, specifically in the context of disease. Consequently, the demand for efficient network visualization and analysis tools, which can interoperate with modern data analysis…

Biological network analysis steps

Most recent bioinformatics tools

NetSlim
Dataset

NetSlim

Gathers information that assist user to manipulate and visualize of pathways.…

Gathers information that assist user to manipulate and visualize of pathways. NetSlim is an initial step to develop high confidence pathway-specific reaction maps. This database is useful for…

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Mouse IDGenes
Dataset

Mouse IDGenes Gene interactions in the developing mouse brain

Gathers information for genetic interactions in the developing mouse brain.…

Gathers information for genetic interactions in the developing mouse brain. Mouse IDGenes consists in a manually curated reference database for genetic interactions in the developing mouse brain…

CBN
Dataset

CBN Causal Biological Networks database

Gathers information about biological expression language (BEL)-scripted causal…

Gathers information about biological expression language (BEL)-scripted causal network models that describe signaling pathways relevant in diseased and non-diseased pulmonary and vascular tissues.…

BioAfrica
Dataset

BioAfrica

Provides information on Human Immunodeficiency Virus (HIV) proteins. BioAfrica…

Provides information on Human Immunodeficiency Virus (HIV) proteins. BioAfrica is a resource collaborating with Swiss-Prot ViralZone group of the Swiss Institute of Bioinformatics (SIB). The database…

Most popular analytical software and databases

CMGRN
Web

CMGRN Constructing Multilevel Gene Regulatory Networks

An integrative web server to unravel hierarchical interactive networks at…

An integrative web server to unravel hierarchical interactive networks at different regulatory levels. The developed method used the Bayesian network modeling to infer causal interrelationships among…

ProteinLounge
Web

ProteinLounge

Develops many interactive web-based databases and software to help the…

Develops many interactive web-based databases and software to help the life-scientists understand the complexity of systems biology. Systems biology efforts focus on understanding cellular networks,…

NETAL
Desktop

NETAL Network Alignment

An algorithm for the global alignment of protein-protein interaction networks.…

An algorithm for the global alignment of protein-protein interaction networks. NETAL uses a greedy method, based on the alignment scoring matrix, which is derived from both biological and topological…

gtrieScanner
Desktop

gtrieScanner

A software tool that uses the g-trie data structure to count occurrences of…

A software tool that uses the g-trie data structure to count occurrences of subgraphs on larger graphs, determining if they are network motifs. To compile you need a C++ compiler (use GCC if…

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