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Information


Unique identifier OMICS_13187
Name Network
Alternative name Phylogenetic Network Software
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Genetic nucleotide position, genetic locus, trait, linguistic feature, or more generally "character"
Input format FASTA, PHYLIP, NEXUS
Output data Phylogenetic networks and trees, ancestral types and potential types, evolutionary branchings and variants
Output format STO
Operating system Windows
Computer skills Medium
Version 5.0
Stability Stable
Requirements
DNA Alignment, Network Publisher, pibase
Maintained Yes

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  • person_outline Network development team <>

Network in publications

 (8)
PMCID: 4933389
PMID: 27379532
DOI: 10.1371/journal.pone.0158582

[…] θπ > θw indicating a recent population growth and θπ < θw indicating a population bottleneck []., a minimum spanning network was built for each species using network version 4.5.0.1 (shareware phylogenetic network software; http://www.fluxus-engineering.com/sharenet.htm) to investigate the geographic distribution of haplotypes., for each species, the genetic differentiation among sampling […]

PMCID: 4262973
PMID: 25471204
DOI: 10.1186/s12862-014-0244-6

[…] described above., we also constructed ant and fungal haplotype networks from the co and its sequences, respectively using phylogenetic median-joining network analysis [] as implemented in the free phylogenetic network software [] and tcs v. 1.21 []. the median-joining method first constructs the minimum spanning networks before adding a few consensus sequences that function as median vectors […]

PMCID: 4267869
PMID: 25540692
DOI: 10.1002/ece3.1301

[…] using mega v.5.0 (tamura et al. ). the evolutionary distances were estimated by maximum likelihood using the 2-parameter model of kimura (kimura ). the phylogenetic network was constructed using phylogenetic network software v. 4.6.1.0 (http://fluxus-engineering.com), using the median-joining algorithm (bandelt et al. )., strains and isolates were grouped in clusterons, sharing […]

PMCID: 4212128
PMID: 25319190
DOI: 10.1186/s12916-014-0183-5

[…] to sequences available from our study populations: this included 49 sequences from chonyi, kilifi district, kenya and 31 from mugil, madang province, png. network analysis was performed using phylogenetic network software version 4.6.1.1 together with the add-ons dna alignment and network publisher (fluxus-engineering, germany). the network analysis was based on the median joining […]

PMCID: 4287955
PMID: 25606411
DOI: 10.1016/j.mgene.2014.03.002

[…] disequilibrium (ld) between the loci (d´ and r2) and pairwise population differentiation (fst). haplotype age and phylogenetic relationships were obtained using the reduced median algorithm of the phylogenetic network software fluxus 4.611 (http://www.fluxus-engineering.com)., an eventual functional significance of nucleotide substitutions was analysed in silico on the sequence similarity […]


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