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Citations per year

Number of citations per year for the bioinformatics software tool Network
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Tool usage distribution map

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Protocols

Network specifications

Information


Unique identifier OMICS_13187
Name Network
Alternative name Phylogenetic Network Software
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Genetic nucleotide position, genetic locus, trait, linguistic feature, or more generally "character"
Input format FASTA, PHYLIP, NEXUS
Output data Phylogenetic networks and trees, ancestral types and potential types, evolutionary branchings and variants
Output format STO
Operating system Windows
Computer skills Medium
Version 5.0
Stability Stable
Requirements
DNA Alignment, Network Publisher, pibase
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Network development team

Network citations

 (10)
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Unravelling population genetic structure with mitochondrial DNA in a notional panmictic coastal crab species: sample size makes the difference

2016
BMC Evol Biol
PMCID: 4960869
PMID: 27455997
DOI: 10.1186/s12862-016-0720-2
call_split See protocol

[…] each population, the overall population and geographic groups of populations, using the software ARLEQUIN ver. 3.5.2.2 [].A minimum spanning network was built with NETWORK version 4.5.0.1 (Shareware Phylogenetic Network Software; http://www.fluxus-engineering.com/sharenet.htm) to assess the intra-specific evolutionary relationships among the haplotypes of P. marmoratus. Genetic differentiation am […]

library_books

Demographic History and Reproductive Output Correlates with Intraspecific Genetic Variation in Seven Species of Indo Pacific Mangrove Crabs

2016
PLoS One
PMCID: 4933389
PMID: 27379532
DOI: 10.1371/journal.pone.0158582

[…] on, with θπ > θw indicating a recent population growth and θπ < θw indicating a population bottleneck [].A minimum spanning network was built for each species using NETWORK version 4.5.0.1 (Shareware Phylogenetic Network Software; http://www.fluxus-engineering.com/sharenet.htm) to investigate the geographic distribution of haplotypes.For each species, the genetic differentiation among sampling sit […]

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Variable interaction specificity and symbiont performance in Panamanian Trachymyrmex and Sericomyrmex fungus growing ants

2014
BMC Evol Biol
PMCID: 4262973
PMID: 25471204
DOI: 10.1186/s12862-014-0244-6
call_split See protocol

[…] d as described above.We also constructed ant and fungal haplotype networks from the CO and ITS sequences, respectively using phylogenetic median-joining network analysis [] as implemented in the Free Phylogenetic Network Software [] and TCS v. 1.21 []. The median-joining method first constructs the minimum spanning networks before adding a few consensus sequences that function as median vectors in […]

call_split

Tick borne encephalitis virus subtypes emerged through rapid vector switches rather than gradual evolution

2014
Ecol Evol
PMCID: 4267869
PMID: 25540692
DOI: 10.1002/ece3.1301
call_split See protocol

[…] rmed using Mega v.5.0 (Tamura et al. ). The evolutionary distances were estimated by Maximum Likelihood using the 2-parameter model of Kimura (Kimura ). The phylogenetic network was constructed using Phylogenetic Network Software v. 4.6.1.0 (http://fluxus-engineering.com), using the Median-joining algorithm (Bandelt et al. ).Strains and isolates were grouped in clusterons, sharing the same amino a […]

library_books

Limited antigenic diversity of Plasmodium falciparum apical membrane antigen 1 supports the development of effective multi allele vaccines

2014
PMCID: 4212128
PMID: 25319190
DOI: 10.1186/s12916-014-0183-5

[…] tricted to sequences available from our study populations: this included 49 sequences from Chonyi, Kilifi District, Kenya and 31 from Mugil, Madang Province, PNG. Network analysis was performed using Phylogenetic Network software version 4.6.1.1 together with the add-ons DNA Alignment and Network Publisher (Fluxus-engineering, Germany). The network analysis was based on the Median Joining algorith […]

call_split

PSMA6 (rs2277460, rs1048990), PSMC6 (rs2295826, rs2295827) and PSMA3 (rs2348071) genetic diversity in Latvians, Lithuanians and Taiwanese

2014
PMCID: 4287955
PMID: 25606411
DOI: 10.1016/j.mgene.2014.03.002
call_split See protocol

[…] ge disequilibrium (LD) between the loci (D´ and r2) and pairwise population differentiation (Fst). Haplotype age and phylogenetic relationships were obtained using the Reduced Median algorithm of the Phylogenetic network software Fluxus 4.611 (http://www.fluxus-engineering.com). […]


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