NetworkAnalyst statistics

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Citations per year

Number of citations per year for the bioinformatics software tool NetworkAnalyst
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Tool usage distribution map

This map represents all the scientific publications referring to NetworkAnalyst per scientific context
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Associated diseases

This word cloud represents NetworkAnalyst usage per disease context
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Popular tool citations

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Protocols

NetworkAnalyst specifications

Information


Unique identifier OMICS_04114
Name NetworkAnalyst
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Publications for NetworkAnalyst

NetworkAnalyst citations

 (39)
library_books

LYL1 gene amplification predicts poor survival of patients with uterine corpus endometrial carcinoma: analysis of the Cancer genome atlas data

2018
BMC Cancer
PMCID: 5930686
PMID: 29716549
DOI: 10.1186/s12885-018-4429-z

[…] ). The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of gene expression data [] was subjected to Gene Set Enrichment Analysis (GSEA) []. For visualization of enrichment pathway, the NetworkAnalyst (http://www.networkanalyst.ca) was used [].In doing so, the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database was applied, achieving confidence scores of 400 […]

library_books

Identifying Host Molecular Features Strongly Linked With Responses to Huanglongbing Disease in Citrus Leaves

2018
Front Plant Sci
PMCID: 5836289
PMID: 29541089
DOI: 10.3389/fpls.2018.00277

[…] Individual data annotation and analysis were performed using NetworkAnalyst (), a web-based tool to visualize protein–protein network analysis. The homologous TAIR IDs were uploaded and mapped against the STRING interactome database using default parameters pro […]

library_books

Meta and cross species analyses of insulin resistance based on gene expression datasets in human white adipose tissues

2018
Sci Rep
PMCID: 5829071
PMID: 29487289
DOI: 10.1038/s41598-017-18082-7

[…] is deposited in the GEO database as GSE102540. The microarray datasets were preprocessed and normalized using the RMA method. A biological protein-protein interaction (PPI) network was constructed by NetworkAnalyst (http://www.networkanalyst.ca/), using the Z-scores of our meta-signature and the interactome database from InnateDB. […]

library_books

Identification of Shared Molecular Signatures Indicate the Susceptibility of Endometriosis to Multiple Sclerosis

2018
Front Genet
PMCID: 5820528
PMID: 29503661
DOI: 10.3389/fgene.2018.00042

[…] or integrated DEGs. The resulting PPI network scattered in 1–20 subnetwork including one large network with highest nodes and edges. We investigated the network features of large PPI subnetwork using NetworkAnalyst and Cytoscape plug-in “NetworkAnalyzer” that accumulated as an undirected graph (edges have no direction), where the proteins/genes were denoted with “nodes” and the interaction between […]

library_books

Cholangiocarcinoma associated genes identified by integrative analysis of gene expression data

2018
PMCID: 5866017
PMID: 29436659
DOI: 10.3892/mmr.2018.8594

[…] ed using the rank product algorithm (RankProd package in R statistical software; www.r-project.org) implemented in the web-based tool NetworkAnalyst (integrative meta-analysis of expression data; www.networkanalyst.ca) (,). Normalized gene expression datasets were uploaded into NetworkAnalyst. The datasets were subsequently processed and annotated to adjust the data format and class labels to a co […]

library_books

Loss of disease tolerance during Citrobacter rodentium infection is associated with impaired epithelial differentiation and hyperactivation of T cell responses

2018
Sci Rep
PMCID: 5770458
PMID: 29339782
DOI: 10.1038/s41598-017-17386-y

[…] fp1, Sectm1a, Slc36a1, St6galnac5, Usp2. DEGs were subject to over-representation analysis using GOseq and clusterProfiler Bioconductor packages to determine enriched GO and KEGG terms, respectively. NetworkAnalyst was used to visualize and project DEGs in the context of mouse protein-protein interactome based on the STRING database. In our analysis, a threshold of confidence value 0.900 was used […]


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NetworkAnalyst institution(s)
Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada; Wellcome Trust Sanger Institute, Hinxton, UK

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