Here we surveyed bioinformatics software tools for quantifiy neurite extension and retraction from sequences of digital time-lapse series of images obtained by phase contrast microscopy. Tools are ranked by the biomedical research community.
A Java-based software tool designed for semi-automated quantification of neurite extension and retraction from sequences of digital time-lapse series of images. NeuronGrowth can be applied to image sequences acquired under phase contrast, differential interference contrast (DIC) and fluorescence optics.
Combines state-of-the-art automated neuron tracing and machine learning-enabled neuron classification tools. Aivia provides methods for analyzing time-lapse images. It covers a wide range of applications such as cell/nuclei counting, cell/nuclei tracking, 3D neuron detection and analysis, machine learning cell classification, particle tracking, wound healing and calcium oscillation tracking. Aivia also comes with editing tools to help get even better results.
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