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NeuriteQuant specifications

Information


Unique identifier OMICS_10494
Name NeuriteQuant
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Version 1.24
Stability Stable
Requirements
ImageJ
Maintained Yes

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Maintainer


  • person_outline Leif Dehmelt <>

Publication for NeuriteQuant

NeuriteQuant in publications

 (5)
PMCID: 5309772
PMID: 28198409
DOI: 10.1038/srep42525

[…] technologies, nsw) for 2 h at room temperature. cells were viewed using a 40× or a 63× oil immersion objective on a dmi6500b confocal microscope (leica, mannheim, germany). image j 1.46r with add-in neuritequant was used for morphological analysis., after electrical stimulation, cells were harvested with lysis buffer (containing np40, protease inhibitor cocktail, 1 mm pmsf and 0.5 mm […]

PMCID: 4968589
PMID: 27466127
DOI: 10.1038/nature18928

[…] microscope analysis using carl zeiss laser scanning confocal microscope pascal 5 lsm and pascal 5 lsm software version 3.2. dendrite elongation was assessed following map2 staining followed by neuritequant analysis ., control crispr activation plasmid (sc-437275), rat cd38 crispr activation plasmid (sc-437321-act) were obtained from santa cruz biotechnology. transfection was performed […]

PMCID: 3930942
PMID: 24563732
DOI: 10.3402/jev.v3.22865

[…] for 1 hour at rt. slides were mounted with prolong, with dapi (invitrogen, eugene, or)., semi-automated analysis of neurite length and complexity was carried out by an unbiased observer using the neuritequant program (), which is freely available and functions as a plug-in for the imagej analysis program. images were obtained using a 10× lens in a fluorescently equipped microscope, […]

PMCID: 3842424
PMID: 24312340
DOI: 10.1371/journal.pone.0081711

[…] dapi. coverslips were mounted on slides using prolong gold (molecular probes) and imaged on a zeiss axio imager microscope. images were analyzed using the imagej (national institute of health, us), neuritequant plugin . the longest neurite of each cell was quantified using the neuronj plugin., for all analyses 15 fields were counted per animal, n = 3 animals. statistical significance […]

PMCID: 3832585
PMID: 24260302
DOI: 10.1371/journal.pone.0079796

[…] a total area of 3.2 mm2 containing approximately 1000 neurons., to determine the effect of sirna treatment on neuronal development, quantitative morphometric image analysis was performed using neuritequant (). our analysis focused on the following parameters: a) cell growth to determine proliferation of neuronal precursors, b) neuronal markers to evaluate differentiation of precursors […]


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NeuriteQuant institution(s)
Max-Planck-Institute of Molecular Physiology, Dortmund, Germany; Dortmund University of Technology, Dortmund, Germany; Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA

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