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Neuromantic specifications

Information


Unique identifier OMICS_06591
Name Neuromantic
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Stability Stable
Maintained No

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Publication for Neuromantic

Neuromantic in publications

 (30)
PMCID: 5915526
PMID: 29691458
DOI: 10.1038/s41598-018-24753-w

[…] without attempting to provide a complete list of relevant publications, we recall that existing automated or semi-automated methods include several academic routines– and other freeware (e.g., neuromantic, neuronstudio,) or commercial software packages (e.g., imaris, neurolucida, perkinelmer cellular imaging) offering multiple capabilities. many current methods still require significant […]

PMCID: 5827689
PMID: 29485626
DOI: 10.1038/sdata.2018.6

[…] of the complete standardization process is also posted on neuromorpho.org along with the open-source checking software. inconsistencies are edited using a variety of programs, including cvapp, neuromantic, neutube, vaa3d, trees toolbox, and several more as needed. importantly, all edits are tracked in accompanying log reports., after completing morphological editing, data processing […]

PMCID: 5538238
PMID: 28763053
DOI: 10.1038/sdata.2017.97

[…] 8). this stitching process was iterated until the entire morphology of the neuron was contained within a single three-dimensional image file. finally we digitized neuronal morphologies using the neuromantic reconstruction tool, which is also free and in the public domain. the digital reconstructions were scaled to the appropriate size based on the micron-to-pixel ratio for each microscope (, […]

PMCID: 5116076
PMID: 27845329
DOI: 10.1038/ncomms13421

[…] in scale a2 solution for at least 14 days, making the tissue transparent. layer v neurons were imaged using a confocal laser scanning microscope leica tcs sp8, and reconstructed and analysed using neuromantic reconstruction software, with sholl analysis performed using neurolucida., axon tracing in this study followed a previously published method. aav-tdtomato was obtained from penn vector […]

PMCID: 5103275
PMID: 27830729
DOI: 10.1038/srep36885

[…] morphology was reconstructed from a stack of 148–212 images per cell (voxel size, 758 nm in the x-y plane; 1 μm along the z-axis). image stacks belonging to individual cells were imported into the neuromantic 1.6.3 software for 3-d reconstruction. we quantified the axonal density along the radial axis as previously described. in brief, we counted the number of intersections made by the axons […]


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Neuromantic institution(s)
School of Systems Engineering, University of Reading, Reading, UK

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