NeuroMorph statistics

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Citations per year

Number of citations per year for the bioinformatics software tool NeuroMorph

Tool usage distribution map

This map represents all the scientific publications referring to NeuroMorph per scientific context
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Associated diseases


Popular tool citations

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NeuroMorph specifications


Unique identifier OMICS_27982
Name NeuroMorph
Software type Package/Module, Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes




No version available



  • person_outline Anne Jorstad
  • person_outline Pascal Fua
  • person_outline Graham Knott
  • person_outline Biagio Nigro
  • person_outline Marta Wawrzyniak

Additional information

Publication for NeuroMorph

NeuroMorph citations


Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake Efficiency

PMCID: 5804147
PMID: 29430519
DOI: 10.1523/ENEURO.0298-17.2017

[…] s and the surface distribution of individual DAT molecules. The reconstructed region contained 13 axon terminals (). The corresponding volumes and surface areas (listed in ) were calculated using the NeuroMorph (), a Blender add-on that uses triangular meshes to evaluate the surface area and corresponding normal to determine the volume of each tetrahedron. The total volume occupied by the 13 axon […]


Computer assisted detection of axonal bouton structural plasticity in in vivo time lapse images

PMCID: 5675596
PMID: 29058678
DOI: 10.7554/eLife.29315.018

[…] ; ) and the structures of interest segmented in the TrakEM2 part of the software (). Models were then exported to the Blender software (Blender Foundation, Amsterdam;, and the NeuroMorph toolset (; ) was used to measure axon cross-section areas, bouton and mitochondrial volumes, and PSD surface areas. The beginning and end of each bouton were define […]


EM connectomics reveals axonal target variation in a sequence generating network

PMCID: 5400503
PMID: 28346140
DOI: 10.7554/eLife.24364.020

[…] the neurite or where no descending axon could be found. The remaining 15 cells were imaged at 92 × 92 × 500 nm3 voxel size using a transmitted light brightfield microscope () and reconstructed using Neuromorph (see Materials and methods) (, ; ). In agreement with other observations (; ; ), we found that HVC(RA) dendrites were compact, with 95.0 ± 2.0% (SEM) of the dendritic path found within 100 […]

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NeuroMorph institution(s)
Computer Vision Lab, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland; Centre for Electron Microscopy, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland; International Institute of Molecular and Cell Biology, Warsaw, Poland
NeuroMorph funding source(s)
Supported by the Novartis Foundation for Medical-Biological Research and EU ERC MicroNano Project.

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