NeuroMorph statistics

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Citations per year

Number of citations per year for the bioinformatics software tool NeuroMorph
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Tool usage distribution map

This map represents all the scientific publications referring to NeuroMorph per scientific context
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Associated diseases

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Popular tool citations

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NeuroMorph specifications

Information


Unique identifier OMICS_27982
Name NeuroMorph
Software type Package/Module, Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Medium
Version 2.0
Stability Stable
Requirements
Blender
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainers


  • person_outline Anne Jorstad
  • person_outline Pascal Fua
  • person_outline Graham Knott
  • person_outline Biagio Nigro
  • person_outline Marta Wawrzyniak

Additional information


https://wiki.blender.org/index.php/Extensions:2.6/Py/Scripts/NeuroMorph

Publication for NeuroMorph

NeuroMorph citations

 (3)
library_books

Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake Efficiency

2018
eNeuro
PMCID: 5804147
PMID: 29430519
DOI: 10.1523/ENEURO.0298-17.2017

[…] s and the surface distribution of individual DAT molecules. The reconstructed region contained 13 axon terminals (). The corresponding volumes and surface areas (listed in ) were calculated using the NeuroMorph (), a Blender add-on that uses triangular meshes to evaluate the surface area and corresponding normal to determine the volume of each tetrahedron. The total volume occupied by the 13 axon […]

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Computer assisted detection of axonal bouton structural plasticity in in vivo time lapse images

2017
eLife
PMCID: 5675596
PMID: 29058678
DOI: 10.7554/eLife.29315.018

[…] ; ) and the structures of interest segmented in the TrakEM2 part of the software (). Models were then exported to the Blender software (Blender Foundation, Amsterdam; http://www.blender.org), and the NeuroMorph toolset (http://neuromorph.epfl.ch; ) was used to measure axon cross-section areas, bouton and mitochondrial volumes, and PSD surface areas. The beginning and end of each bouton were define […]

library_books

EM connectomics reveals axonal target variation in a sequence generating network

2017
eLife
PMCID: 5400503
PMID: 28346140
DOI: 10.7554/eLife.24364.020

[…] the neurite or where no descending axon could be found. The remaining 15 cells were imaged at 92 × 92 × 500 nm3 voxel size using a transmitted light brightfield microscope () and reconstructed using Neuromorph (see Materials and methods) (, ; ). In agreement with other observations (; ; ), we found that HVC(RA) dendrites were compact, with 95.0 ± 2.0% (SEM) of the dendritic path found within 100 […]


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NeuroMorph institution(s)
Computer Vision Lab, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland; Centre for Electron Microscopy, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland; International Institute of Molecular and Cell Biology, Warsaw, Poland
NeuroMorph funding source(s)
Supported by the Novartis Foundation for Medical-Biological Research and EU ERC MicroNano Project.

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