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NeuroTransDB specifications

Information


Unique identifier OMICS_10247
Name NeuroTransDB
Alternative name Neurodegenerative Transcriptomic DataBase
Restrictions to use None
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


  • person_outline Shweta Bagewadi

Publication for Neurodegenerative Transcriptomic DataBase

NeuroTransDB citations

 (2)
library_books

NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease

2016
J Biomed Semantics
PMCID: 4939021
PMID: 27392431
DOI: 10.1186/s13326-016-0079-8

[…] es are assembled in widely adopted public archives: The NCBI Gene Expression Omnibus (GEO) [] and ArrayExpress [].For querying AD-specific gene expression data, we used previously developed database, NeuroTransDB [], which contains highly curated meta-data information for eligible AD studies. It assembles studies from public resources namely, GEO and ArrayExpress, using a keyword based search appr […]

library_books

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders

2015
Int J Mol Sci
PMCID: 4691095
PMID: 26690135
DOI: 10.3390/ijms161226148

[…] ogies. Such an approach has been employed by the authors as part of the Neuroallianz [] consortium to extract a comprehensive set of gene features by querying NeuroRDF; incorporating annotations from NeuroTransDB, in order to prioritise gene products as potential biomarkers in AD. Extracted features included basic meta-analysis metrics such as median fold change; knowledge-based features such as t […]


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NeuroTransDB institution(s)
Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany
NeuroTransDB funding source(s)
German Federal Ministry for Education and Research (BMBF) within the BioPharma initiative ‘Neuroallianz’, project D10 ‘In Silico Discovery for putative Biomarkers' (grant number: 1616060B); UCB Pharma GmbH (Monheim, Germany)

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