Protocols

NexABP specifications

Information


Unique identifier OMICS_25053
Name NexABP
Alternative names Next-Generation Anchor Based Phylogeny, ABWGP (Anchor-Based Whole Genome Phylogeny)
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Alok Bhattacharya

Publications for Next-Generation Anchor Based Phylogeny

NexABP citation

call_split

Analysis of IS6110 insertion sites provide a glimpse into genome evolution of Mycobacterium tuberculosis

2015
Sci Rep
PMCID: 4517164
PMID: 26215170
DOI: 10.1038/srep12567
call_split See protocol

[…] ble as supplementary information. Deletions and inversions were predicted by Pindel. Only deletions and inversions larger than 20 bp were considered. SNP based phylogenetic tree was constructed using NexABP. Jaccard distance was used to calculate distance matrix for IS6110 based phylogenetic tree construction. All available insertion sites in different isolates were used to construct binary string […]

NexABP institution(s)
School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India; School of Life Sciences, Jawaharlal Nehru University, New Delhi, India

NexABP reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NexABP