- Unique identifier:
- Software type:
- Restrictions to use:
- Academic or non-commercial use
- Output format:
- Programming languages:
- Python, Shell (Bash)
- Computer skills:
- Next Generation Sequencing Quality Control
- Command line interface
- Output data:
- A file that organizes the quality measures in a three-layered hierarchical output.
- Operating system:
- GNU General Public License version 3.0
- BOWTIE, gnuplot and Sun Grid Engine or TORQUE as cluster manager if running NGSQC on a LINUX cluster
No open topic.
(Dai et al., 2010)
NGSQC: cross-platform quality analysis pipeline for deep sequencing data.
PMID: 21143816 DOI: 10.1186/1471-2164-11-S4-S7
Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, University of Michigan, Ann Arbor, MI, USA; Michigan Center for Translational Pathology, Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Division of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA; Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA; National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI, USA
Supported by R01CA144043-01, a University of Michigan Center for Computational Medicine and Biology Pilot Project, the Pritzker Neuropsychiatric Disorders Research Fund L.L.C. and partly by the National Center for Integrated Biomedical Informatics through NIH grant 1U54DA021519-01A1 to the University of Michigan.
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