NEXT-RNAi specifications

Information


Unique identifier OMICS_27396
Name NEXT-RNAi
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some sequence files and feature files.
Input format FASTA+TSV
Output data Some design information, a report including a graphical display of designs in GBrowse.
Output format TSV+HTML+FASTA+GFF+AFF
Operating system Unix/Linux, Mac OS
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements bowtie, primer3, blat, blast, mdust, ViennaRNA
Maintained Yes

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Maintainers


  • person_outline Michael Boutros <>
  • person_outline Thomas Horn <>

Publication for NEXT-RNAi

NEXT-RNAi institution(s)
German Cancer Research Center (DKFZ), Div. of Signaling and Functional Genomics and University of Heidelberg, Department of Cell and Molecular Biology, Faculty of Medicine Mannheim, Heidelberg, Germany; University of Heidelberg, Hartmut Hoffman-Berling International Graduate School for Molecular and Cellular Biology, Heidelberg, Germany; University of Heidelberg, CellNetworks Cluster of Excellence, Heidelberg, Germany
NEXT-RNAi funding source(s)
Supported by a PhD fellowship by the Studienstiftung, in part by funding from the Deutsche Forschungsgemeinschaft, the Human Frontiers Sciences Program, the Helmholtz Association and the European Community's Seventh Framework Programme FP7/2007-2013 under grant agreement n° 201666.

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