NEXTDB specifications

Information


Unique identifier OMICS_22223
Name NEXTDB
Alternative name The Nematode Expression Pattern DataBase
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 4.0
Maintained No

Taxon


  • Invertebrates
    • Caenorhabditis elegans

NEXTDB citations

 (2)
library_books

Trans generational epigenetic regulation of C. elegans primordial germ cells

2010
PMCID: 3146070
PMID: 20704745
DOI: 10.1186/1756-8935-3-15

[…] genes annotated as having somatic expression also showed H3K36me3 enrichment in the met-1 experiment (Figure ). We further analyzed the expression pattern of these genes in a public in situ database (NEXTDB; http://nematode.lab.nig.ac.jp/. Of those genes with a discernable expression pattern, almost all (17/18) showed expression in adult germ cells, indicating that either these genes may be ubiqui […]

library_books

Caenorhabditis elegans BAH 1 Is a DUF23 Protein Expressed in Seam Cells and Required for Microbial Biofilm Binding to the Cuticle

2009
PLoS One
PMCID: 2727005
PMID: 19707590
DOI: 10.1371/journal.pone.0006741

[…] The predicted bah-1 mRNA (GenBank CAA18365) encodes a 461-amino acid, 53 kDa predicted protein. Amino acid residues 1–215 and 232–461 are confirmed by six expressed sequence tags (ESTs) in the Nematode Expression Pattern Database, National Institute of Genetics, Japan (clones yk841d05, yk1713e02, yk759d11, yk838c01, yk1505d06, yk842d05). No splice variants are predicted by these ESTs. W […]

NEXTDB funding source(s)
Supported by CREST (Core Research for Evolutional Science and Technology) of JST (Japan Science and Technology Corporation) and by a Grant-in-aid for Scientific Research on Priority Areas from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan.

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