Nexus Copy Number pipeline

Nexus Copy Number specifications


Unique identifier OMICS_27041
Name Nexus Copy Number
Software type Application/Script
Interface Command line interface
Restrictions to use License purchase required
Biological technology Illumina, Affymetrix, Agilent Technologies
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Advanced
Version 9.0
Stability Stable
Free trial Yes
Maintained Yes


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Nexus Copy Number IN pipeline

PMCID: 4601524
PMID: 25985138
DOI: 10.1038/ng.3304

[…] the dependence on coverage in supplementary figure 2. in most cases, array-cgh had already been performed prior to submission of samples, but we also used quantisnp70 to check for cnvs, as well as nexus copy number version 7 (biodiscovery, hawthorn, ca). we used merlin71 in familial studies to identify regions identical-by-descent., after removing duplicate reads, we used bedtools72 to measure […]

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