nFuse statistics

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Citations per year

Number of citations per year for the bioinformatics software tool nFuse
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Tool usage distribution map

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Associated diseases

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Popular tool citations

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nFuse specifications

Information


Unique identifier OMICS_01353
Name nFuse
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainers


  • person_outline Cenk Sahinalp
  • person_outline Andrew McPherson

Publication for nFuse

nFuse citations

 (2)
library_books

Comparative assessment of methods for the fusion transcripts detection from RNA Seq data

2016
Sci Rep
PMCID: 4748267
PMID: 26862001
DOI: 10.1038/srep21597

[…] s. It requires pre-built Bowtie references, transcriptome files (both GTF and FASTA format), EST files (FASTA format), genome files (FASTA format), and Gmap references. Here, we used deFuse script of nFuse version 0.2.1. […]

library_books

High Frequency of Fusion Transcripts Involving TCF7L2 in Colorectal Cancer: Novel Fusion Partner and Splice Variants

2014
PLoS One
PMCID: 3946716
PMID: 24608966
DOI: 10.1371/journal.pone.0091264

[…] and 16 tissues from the Illumina Human Body Map v2. For the cell lines with paired whole-genome sequence (HCT116, HCT15, HT29 and SW480), RNA fusion transcripts and DNA breakpoints were identified by nFuse version 0.2.0 . A fusion nomination required three spanning read pairs and two split reads from the RNA-seq data. […]


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nFuse institution(s)
School of Computing Science, Simon Fraser University, Vancouver, BC, Canada; Vancouver Prostate Centre, Vancouver, BC, Canada; Department of Molecular Oncology, BC Cancer Research Centre, Vancouver, BC, Canada
nFuse funding source(s)
Supported by the Natural Sciences and Engineering Research Council of Canada (NSERC), Bioinformatics for Combating Infectious Diseases (BCID) grants, NSERC Alexander Graham Bell Canada Graduate Scholarships (CGS-D), and the CIHR/MSFHR Strategic Training Program in Bioinformatics.

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