NGD specifications

Information


Unique identifier OMICS_21067
Name NGD
Alternative name Nencki Genomics Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Michal Dabrowski

Additional information


The installation of a client is required to access to the database.

Publication for Nencki Genomics Database

NGD citation

call_split

Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP seq data

2015
BMC Bioinformatics
PMCID: 4436866
PMID: 25927199
DOI: 10.1186/s12859-015-0573-5
call_split See protocol

[…] The positive and the negative sequences were obtained from the Nencki Genomics Database - NGD [] http://www.nencki-genomics.org and were based on Ensembl [] funcgen. For the comparison of the scanner performance we used TF ChIP-seq data for 44 TFs + CTCF from fun […]

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