Ngila statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Ngila
info

Tool usage distribution map

This map represents all the scientific publications referring to Ngila per scientific context
info info

Associated diseases

info

Popular tool citations

chevron_left Pairwise nucleotide sequence alignment chevron_right
Want to access the full stats & trends on this tool?

Protocols

Ngila specifications

Information


Unique identifier OMICS_03695
Name Ngila
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Cartwright RA

Publication for Ngila

Ngila citations

 (3)
library_books

“If I have only two children and they die… who will take care of me?” –a qualitative study exploring knowledge, attitudes and practices about family planning among Mozambican female and male adults

2017
PMCID: 5568310
PMID: 28830390
DOI: 10.1186/s12905-017-0419-6

[…] guish that I am out. She feels me on the top of her but she does not open completely her legs whereas I am ejaculate. I withdrawal and ejaculate out, it [sperm] does not prop through upon the vagina [Ngila, male, 44 years-old, IDI, Mahubo].Consistent practices occurred among participants who were not particularly interfered with by relatives such as their mother-in-laws. As well, being constrained […]

library_books

PICS Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination

2011
BMC Bioinformatics
PMCID: 3024941
PMID: 21214904
DOI: 10.1186/1471-2105-12-10

[…] he actual number of codes is very small, with a single character representing each ambiguous region [,]. For large datasets with over 32 distinct sequence patterns in ambiguous regions, PICS-Ord with Ngila zeta cost scores offers a good and fast alternative. Zeta cost scores slightly outperformed simple identity and cost scores in our analysis, confirming the results of previous studies [,].Since […]

call_split

Logarithmic gap costs decrease alignment accuracy

2006
BMC Bioinformatics
PMCID: 1770940
PMID: 17147805
DOI: 10.1186/1471-2105-7-527
call_split See protocol

[…] []. Dawg recorded the actual alignment of each sequence pair making it possible to measure the accuracy of alignments generated through dynamic programming.Pairwise, global alignments were done with Ngila [], an implementation of the candidate-list dynamic programming algorithm of Miller and Myers [] for logarithmic and affine gap costs. Because gap costs are usually optimized for specific substi […]


Want to access the full list of citations?
Ngila institution(s)
Department of Genetics, University of Georgia, Athens, GA, USA

Ngila reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Ngila