NGMASTER specifications

Information


Unique identifier OMICS_18151
Name NGMASTER
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Output format FASTA
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements
BioPython, isPcr
Maintained Yes

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Maintainer


  • person_outline Jason Kwong <>

Publication for NGMASTER

NGMASTER in publication

PMCID: 5784116
PMID: 29367612
DOI: 10.1038/s41598-018-20015-x

[…] genomes of interest from the international collections underwent de novo assembly using megahit v1.1.2., both the mlst and ng-mast for all genomes were determined in silico using ariba and ngmaster, respectively. for strains where sequence data was not available, mlst was performed using mlst v2.1. sequences with different ng-mast profiles were compared using bioedit v7.0.9.0. novel […]


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NGMASTER institution(s)
Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, University of Melbourne, Peter Doherty Institute for Infection & Immunity, Melbourne, Australia; Department of Microbiology & Immunology, University of Melbourne, Peter Doherty Institute for Infection & Immunity, Melbourne, Australia; Microbiological Diagnostic Unit Public Health Laboratory, University of Melbourne, Peter Doherty Institute for Infection & Immunity, Melbourne, Australia; Institute of Environmental Science and Research, Wellington, New Zealand; Victorian Life Sciences Computation Initiative, University of Melbourne, Carlton, Australia
NGMASTER funding source(s)
Supported by the National Health and Medical Research Council, Australia with a postgraduate scholarship (GNT1074824), and fellowships (GNT1105905) and (GNT1008549), by the Department of Microbiology and Immunology at The University of Melbourne and by the New Zealand Ministry of Health.

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