Ngmlr specifications


Unique identifier OMICS_16282
Name Ngmlr
Alternative name coNvex Gap-cost alignMent for Long Reads
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output format SAM/BAM
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux, Mac OS
Programming languages C++
License MIT License
Computer skills Advanced
Version 0.2.6
Stability Beta
Maintained Yes



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  • person_outline Philipp Rescheneder <>

Publication for coNvex Gap-cost alignMent for Long Reads

Ngmlr institution(s)
Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA; Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, Vienna, Austria; Simons Center for Quantitative Biology, Cold Spring, Harbor Laboratory, Cold Spring, Harbor, NY, USA; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA
Ngmlr funding source(s)
Supported through National Science Foundation awards (DBI-1350041, IOS-1732253 and IOS -1445025), National Institutes of Health award (R01-HG006677) and the RNA-DK Biology (W1207-B09).

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