Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

ngs_backbone | A pipeline for read cleaning, mapping and SNP calling using next generation sequence

A bioinformatic pipeline created to work on next generation sequence (NGS) analysis as well as with Sanger sequences. It is capable of cleaning reads, prepare a novo assembly, map reads against a reference, look for SNPs and SSRs, and do some function annotation like: ORFs, GO terms and sequence descriptions.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

ngs_backbone forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

ngs_backbone classification

ngs_backbone specifications

Unique identifier:
OMICS_01132
Interface:
Command line interface
Input format:
FASTQ, SAM, VCF, GFF
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU Affero General Public License version 3
Stability:
Stable

ngs_backbone distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

ngs_backbone support

Maintainer

  • ngs_backbone <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Instituto de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV), Universidad Politécnica de Valencia, Valencia, Spain

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.