NGS-Bits specifications

Information


Unique identifier OMICS_20169
Name NGS-Bits
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format SAM, BAM, VCF, BED, FASTQ
Output format qcML, TSV, SAM, BAM, VCF, BED, FASTQ, FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.1
Stability Stable
Requirements g++, qmake, git, cmake, python, matplotlib
Maintained Yes

Subtools


  • ReadQC
  • MappingQC
  • VariantQC
  • SomaticQC

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Versioning


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Maintainer


  • person_outline Christopher Schroeder <>

Publication for NGS-Bits

NGS-Bits institution(s)
Institute of Medical Genetics and Applied Genomics, University of Tubingen, Tubingen, Germany; Department of General, Visceral and Transplant Surgery, University Hospital Tubingen, Tubingen, Germany; Interfaculty Institute for Cell Biology, Department of Immunology, University of Tubingen, Tubingen, Germany; Department of Internal Medicine I, University Hospital Tubingen, Tubingen, Germany
NGS-Bits funding source(s)
Supported by the Federal Ministry of Education and Research (BMBF) [FKZ 01ZX1301A].

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