NGS-eval specifications

Information


Unique identifier OMICS_08031
Name NGS-eval
Interface Web user interface
Restrictions to use None
Input data The references should be in FASTA format, whereas the reads can be uploaded in FASTA or FASTQ format, without or with compression (gzip or zip).
Input format FASTA, FASTQ
Biological technology Illumina, Roche
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Bernd W. Brandt <>

Publications for NGS-eval

NGS-eval in publication

PMCID: 5499652
PMID: 28170034
DOI: 10.1093/dnares/dsw064

[…] using sanger sequencing (genbank accession number: kx925848) was used to exemplarily infer the error rate and patterns of individual sequencing reads for the aligned region (≈ 3200 bp) using ngs-eval. in total, 21 individual sequencing reads were used to exemplarily infer the error patterns. for an individual read, the most prominent error type is substitution (average substitution per […]


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NGS-eval institution(s)
Department of Preventive Dentistry, Academic Centre for Dentistry Amsterdam (ACTA), University of Amsterdam and VU University Amsterdam, Amsterdam, Netherlands
NGS-eval funding source(s)
University of Amsterdam under the research priority area ‘Oral Infections and Inflammation’ (to W.C.).

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