NGS-FC statistics

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Citations per year

Number of citations per year for the bioinformatics software tool NGS-FC
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Tool usage distribution map

This map represents all the scientific publications referring to NGS-FC per scientific context
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Associated diseases

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Popular tool citations

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NGS-FC specifications

Information


Unique identifier OMICS_20778
Name NGS-FC
Alternative name Next-Generation Sequencing Format Converter
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input format FASTA,PSL,BEDGRAPH,SCARF,GFF3,SAM,BAM,2BIT,QSEQ,BED,GTF,FASTQ,BOWTIE,WIG
Output format FASTA,PSL,BEDGRAPH,SCARF,GFF3,SAM,BAM,2BIT,QSEQ,BED,GTF,FASTQ,BOWTIE,WIG
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 2.0
Stability Stable
Requirements
Java SE Development Kit, NetBeans IDE
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Bairong Shen

Publication for Next-Generation Sequencing Format Converter

NGS-FC citation

library_books

Data integration in biological research: an overview

2015
PMCID: 4557916
PMID: 26336651
DOI: 10.1186/s40709-015-0032-5

[…] an manipulation of the data in order to verify the correctness of the transformation. In the case of NGS data, we rely on tools for conversion between next generation sequencing data formats, such as NGS-FC (http://sourceforge.net/projects/ngsformaterconv/), to ensure each tool in a workflow can work with the right format. […]


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NGS-FC institution(s)
Center for Systems Biology, Soochow University, Suzhou, China; School of Computer Science and Technology, Soochow University, China; School of Chemistry, Biology and Material Engineering, Suzhou University of Science and Technology, Suzhou, China
NGS-FC funding source(s)
Supported by the National Natural Science Foundation of China (grant Nos. 31670851, 31470821, 91530320, and 61602332); National Key Research and Development Program of China (2016YFC1306605); and Natural Science Fund for Colleges and Universities in Jiangsu Province (No.14KJB520035).

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