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Associated diseases

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NGS-FC specifications

Information


Unique identifier OMICS_20778
Name NGS-FC
Alternative name Next-Generation Sequencing Format Converter
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input format FASTA,PSL,BEDGRAPH,SCARF,GFF3,SAM,BAM,2BIT,QSEQ,BED,GTF,FASTQ,BOWTIE,WIG
Output format FASTA,PSL,BEDGRAPH,SCARF,GFF3,SAM,BAM,2BIT,QSEQ,BED,GTF,FASTQ,BOWTIE,WIG
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 2.0
Stability Stable
Requirements
Java SE Development Kit, NetBeans IDE
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Bairong Shen <>

Publication for Next-Generation Sequencing Format Converter

NGS-FC citation

library_books

Comprehensive analysis of microRNAs in breast cancer

2012
PMCID: 3521236
PMID: 23281739
DOI: 10.1186/1471-2164-13-S7-S18

[…] differentially expressed mirnas in breast cancer using an experimental approach., ngs normal and ngs tumor denote mirna relative read counts (tpm) in normal and tumor tissues. the ngs fold change (ngs fc) values are the quotients of mirna read counts in normal tissue divided by those in tumor tissue. the pcr fold change (pcr fc) values are the quotients of mirna expression levels, relative […]


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NGS-FC institution(s)
Center for Systems Biology, Soochow University, Suzhou, China; School of Computer Science and Technology, Soochow University, China; School of Chemistry, Biology and Material Engineering, Suzhou University of Science and Technology, Suzhou, China
NGS-FC funding source(s)
Supported by the National Natural Science Foundation of China (grant Nos. 31670851, 31470821, 91530320, and 61602332); National Key Research and Development Program of China (2016YFC1306605); and Natural Science Fund for Colleges and Universities in Jiangsu Province (No.14KJB520035).

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