NGS graph generator specifications

Information


Unique identifier OMICS_31738
Name NGS graph generator
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A mapping file from alignment output such as TopHat or Bowtie, the GTF/GFF file used when running alignment and a chromosome length file.
Input format BAM,GTF/GFF
Operating system Unix/Linux
Programming languages Python, R, Shell (Bash)
Computer skills Advanced
Stability Stable
Requirements
SAMtools, Mega Blast
High performance computing Yes
Maintained Yes

Download


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Versioning


No version available

Maintainer


  • person_outline Tom Freeman

Additional information


http://seq-graph.roslin.ed.ac.uk/tutorial.php

Information


Unique identifier OMICS_31738
Name NGS graph generator
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Registration required Yes
Maintained Yes

Download


github.png

Maintainer


  • person_outline Tom Freeman

Additional information


http://seq-graph.roslin.ed.ac.uk/tutorial.php

Publication for NGS graph generator

NGS graph generator institution(s)
Systems Immunology Group and Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh, UK; Mater Research Institute, University of Queensland, Brisbane, QLD , Australia; Translational Research Institute, University of Queensland, Brisbane, QLD, Australia; Life Science Informatics Group, Department of Computer Science, Konstanz University, Konstanz, Germany; Astex Pharmaceuticals, Cambridge, UK; Cellular Genetics Informatics, Wellcome Genome Campus, Hinxton, UK; Department of Pathology, University of Cambridge, Cambridge, UK; UKM Medical Molecular Biology Institute (UMBI), Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia
NGS graph generator funding source(s)
Supported by the Biotechnology and Biological Sciences Research Council (BBSRC) grant no. BB/J019267/1, an Institute Strategic Grant from the Biotechnology and Biological Sciences Research Council (BBSRC) (BB/JO1446X/1) and Majlis Amanah Rakyat (MARA), a Malaysian Government agency.

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