ngs.plot specifications

Information


Unique identifier OMICS_00922
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements doMC, BSgenome, Rsamtools, ShortRead
Maintained Yes

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Documentation


Maintainers


  • person_outline Li Shen <>
  • person_outline Lisa Placanica <>

ngs.plot article

ngs.plot institution(s)
Fishberg Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
ngs.plot funding source(s)
Supported by the Friedman Brain Institute and the National Institutes of Health [P50MH096890 and P01DA008227].

ngs.plot review

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Fabien Pichon

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Desktop
I use it to generate heatmaps and average profiles. Works good. You can choose to center your plots on TSS or on genebody and even enhancers (but works worse because of the incomplete database, of course). Usefull to quickly see if your reads or peaks are located where you expect them or not.

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