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ngs.plot | Quick mining and visualization of NGS data by integrating genomic databases

Allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions. ngs.plot is a useful tool to help fill the gap between massive datasets and genomic information in this era of big sequencing data. ngs.plot is now available on the Galaxy tool shed.

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Fabien Pichon

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I use it to generate heatmaps and average profiles. Works good. You can choose to center your plots on TSS or on genebody and even enhancers (but works worse because of the incomplete database, of course). Usefull to quickly see if your reads or peaks are located where you expect them or not.

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ngs.plot classification

ngs.plot specifications

Unique identifier:
OMICS_00922
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Programming languages:
Python, R
Computer skills:
Advanced
Requirements:
doMC, BSgenome, Rsamtools, ShortRead

ngs.plot distribution

versioning

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No versioning.

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ngs.plot support

Documentation

Maintainer

  • Li Shen <>

Credits

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Publications

Institution(s)

Fishberg Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA

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