ngs_te_mapper statistics

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Associated diseases

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ngs_te_mapper specifications

Information


Unique identifier OMICS_06554
Name ngs_te_mapper
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Publication for ngs_te_mapper

ngs_te_mapper in publications

 (2)
PMCID: 5570135
PMID: 28472469
DOI: 10.1093/nar/gkx355

[…] genome using the ‘mcclintock meta-pipeline’ (https://github.com/bergmanlab/mcclintock). only the non-redundant, unambiguous te insertions, identified by ‘temp’, ‘te-locate’, ‘re-locate’ or ‘ngs_te_mapper’ software with default settings, were taken for further consideration. totally, 2839 known and 1238 novel te insertion sites were identified. the te insertion and piwi domain […]

PMCID: 4154752
PMID: 25188499
DOI: 10.1371/journal.pone.0106689

[…] of repeats such as tes is fundamental to the study of genome evolution, as repeats affect genome size structure, as well as genome function , , –. several tools (e.g. t-lex2 , retroseq , tea , ngs_te_mapper , relocate , retroseq , popoolation te , te-locate ) are currently available for discovery and annotation of te sequences in high-throughput sequencing data. however, […]


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ngs_te_mapper institution(s)
Faculty of Life Sciences, University of Manchester, Manchester, UK

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