NGS-Trex specifications


Unique identifier OMICS_18473
Name NGS-Trex
Alternative name NGS TRanscriptome profile EXplorer
Software type Pipeline/Workflow
Interface Web user interface
Restrictions to use None
Input format FASTA, FASTQ
Programming languages Perl, PHP
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Flavio Mignone <>

Additional information

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Publications for NGS TRanscriptome profile EXplorer

NGS-Trex institution(s)
Dipartimento di Chimica, Università degli Studi di Milano, Milano, Italy; Dipartimento di Scienze e Innovazione Tecnologica, Università del Piemonte Orientale, Alessandria, Italy; Dipartimento di Bioscienze, Biotecnologie e Scienze Farmacologiche, Università degli Studi di Bari “A. Moro”, Bari, Italy; Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy
NGS-Trex funding source(s)
Supported by “Ministero dell’Istruzione, Università e Ricerca” (MIUR, Italy): “PRIN 2009- Large-scale identification and characterization of alternative splicing in the human transcriptome through computational and experimental approaches"; Consiglio Nazionale delle Ricerche: Flagship Project “Epigen”, PNR-CNR Aging Program 2012-2014, Italian Research Foundation for amyotrophic lateral sclerosis (AriSLA) and by Italian Ministry for Foreign Affairs (Italy-Israel actions).

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