NGSadmix protocols

NGSadmix specifications


Unique identifier OMICS_01553
Name NGSadmix
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Line Skotte <>

Publication for NGSadmix

NGSadmix IN pipeline

PMCID: 4915356
PMID: 26983554
DOI: 10.1093/molbev/msw051

[…] we identified 5,894,205 and 6,281,924 snps passing filtering criteria (see “materials and methods” section ) across the 24 p. tremula samples and 22 p. tremuloides samples, respectively., we used ngsadmix (skotte et al. 2013) to infer individual ancestry based on genotype likelihoods, which takes the uncertainty of genotype calling into account. it clearly sub-divided all sampled individuals […]

NGSadmix institution(s)
The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen; Center for GeoGenetics, National History Museum of Denmark, Copenhagen, Denmark
NGSadmix funding source(s)
This work was supported in part by LuCamp, Villum Foundation, and the Danish National Research Foundation.

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