NGSCheckMate specifications

Information


Unique identifier OMICS_17414
Name NGSCheckMate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format BAM, VCF, FASTQ
Output format TXT, PDF
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Requirements
SAMtools, bcftools, R
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Peter Park

Publication for NGSCheckMate

NGSCheckMate institution(s)
Samsung Genome Institute, Samsung Medical Center, Seoul, South Korea; SD Genomics Co., Ltd, Seoul, South Korea; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA; Division of Genetics and Genomics, Boston Children’s Hospital and Harvard Medical School, Boston, MA, USA; Ludwig Center at Harvard, Boston, MA, USA
NGSCheckMate funding source(s)
Supported by Harvard Medical School Eleanor and Miles Shore Fellowship; Randolph Hearst Fund; National Institute on Aging [K01AG051791]; National Institute of Mental Health [1P50MH106933, 1U01MH106883]; National Eye Institute [R01EY024230]; Korean Health Technology R&D Project, Ministry of Health & Welfare, Republic of Korea [HI13C2096].

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