ngsF-HMM specifications

Unique identifier:
OMICS_11515
Interface:
Command line interface
Input data:
As input ngsF-HMM reads a genotype likelihood (GL) file composed of 3 genotype likelihoods, per site and individual. The file can be either in binary (as doubles) or gzipped text (sites on rows). The latter case allows for initial non-genotype columns.
Programming languages:
C, C++
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
zlib, gsl, md5sum

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ngsF-HMM support

Documentation

Maintainer

  • Filipe G. Vieira <>

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Publications

Institution(s)

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; Department of Biology, University of Copenhagen, Copenhagen, Denmark; Department of Integrative Biology, University of California, Berkeley, CA, USA

Funding source(s)

A DFF-MOBILEX grant (DFF-1325-00136); a Villum Foundation fellowship

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