ngsF-HMM specifications


Unique identifier OMICS_11515
Name ngsF-HMM
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data As input ngsF-HMM reads a genotype likelihood (GL) file composed of 3 genotype likelihoods, per site and individual. The file can be either in binary (as doubles) or gzipped text (sites on rows). The latter case allows for initial non-genotype columns.
Operating system Unix/Linux
Programming languages C, C++
Computer skills Advanced
Stability Stable
Requirements zlib, gsl, md5sum
Maintained Yes


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  • person_outline Filipe G. Vieira <>

ngsF-HMM article

ngsF-HMM institution(s)
Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; Department of Biology, University of Copenhagen, Copenhagen, Denmark; Department of Integrative Biology, University of California, Berkeley, CA, USA
ngsF-HMM funding source(s)
A DFF-MOBILEX grant (DFF-1325-00136); a Villum Foundation fellowship

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