NGSmethDB specifications

Information


Unique identifier OMICS_01844
Name NGSmethDB
Restrictions to use None
Database management system NoSQL
Community driven No
Data access File download, Browse, Application programming interface
User data submission Not allowed
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/NGSmethDB

Documentation


Maintainers


  • person_outline José L. Oliver
  • person_outline Michael Hackenberg

Additional information


http://bioinfo2.ugr.es:8888/NGSmethDB/manual/

Publications for NGSmethDB

NGSmethDB citation

call_split

CpGislandEVO: A Database and Genome Browser for Comparative Evolutionary Genomics of CpG Islands

2013
Biomed Res Int
PMCID: 3800598
PMID: 24205506
DOI: 10.1155/2013/709042
call_split See protocol

[…] Since the lack of CGI methylation is a very good indicator of function [], we linked CpGislandEVO to a relevant subset of NGSmethDB [, ], where a wide variety of single-cytosine-resolution methylation methylome maps from different tissues and species are available. Methylomes were obtained with NGSmethPipe [] (http://bio […]

NGSmethDB institution(s)
Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva, Granada, Spain; Laboratory of Bioinformatics, Centro de Investigación Biomédica, PTS, Avda. del Conocimiento, Granada, Spain; Department of Applied Physics II, Universidad de Málaga, Málaga, Spain; Genetics of Complex Diseases Group, GENyO, Pfizer-University of Granada-Junta de Andalucía Center for Genomics and Oncological Research, Granada, Spain
NGSmethDB funding source(s)
Supported by Spanish Government [AGL2013-49090-C2-2-R and FIS2012-36282]; Ministry of Education of Spain [FPU13/05662].

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