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Alternative name: NGSPE

Provides a method capable of discovering high-quality genomic variation in DNA sequence data. NGSpeAnalysis is a pipeline using open-source tools which can implement a set of pair ended Next-generation sequencing (NGS) analysis, include short reads alignment, high-quality variation genotype calling and variants annotation. It can be run both on a single workstation and in a cluster High Performance Computing (HPC) environment.

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NGSpeAnalysis classification

NGSpeAnalysis specifications

Software type:
Restrictions to use:
Programming languages:
Shell (Bash)
Computer skills:
Command line interface
Operating system:
GNU General Public License version 2.0

NGSpeAnalysis distribution


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NGSpeAnalysis support



  • Ke Huang <>


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Diabetes Molecular Genetics Section, PECRB, NIDDK, National Institutes of Health, Phoenix, AZ, USA; Department of Biomedical Informatics, Arizona State University, Phoenix, AZ, USA

Funding source(s)

Supported by the Intramural Program of NIDDK, NIH and by a Virginia G. Piper Foundation Bridge Award.

Link to literature

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