NgsRelate specifications

Information


Unique identifier OMICS_09817
Name NgsRelate
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Ida Moltke

Publication for NgsRelate

NgsRelate citation

library_books

The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes

2017
Sci Rep
PMCID: 5278401
PMID: 28134350
DOI: 10.1038/srep41529

[…] sen and Moltke showed that using NGSrelate with 1X coverage resulted in large variance and ambiguous relatedness estimates, yet it still outperformed PLINK2 with these low read depths. With our data, NGSrelate was not able to correctly estimate any of the relationships, including the known one between E81 and E82 (data not shown). Manichaikul and colleagues successfully implemented KING on data se […]

NgsRelate institution(s)
Center for GeoGenetics, University of Copenhagen, Copenhagen, Denmark; The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark

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