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NGSUtils | A software suite for analyzing and manipulating NGS datasets

A suite of software tools for manipulating data common to next-generation sequencing experiments, such as FASTQ, BED and BAM format files. With modules that operate from FASTQ pre-processing through BAM post-processing and RPKM calculations, NGSUtils compliments existing tools and provides unique functionality that helps each step of an NGS data analysis pipeline. NGSUtils covers different aspects of NGS data analysis, including pre-processing, post-processing, filtering, format conversion and final result calculations. NGSUtils provides a stable and modular platform for data management and analysis.

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NGSUtils forum

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NGSUtils classification

NGSUtils specifications

Unique identifier:
OMICS_02104
Interface:
Command line interface
Biological technology:
Illumina, Life Technologies, Roche
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes
Software type:
Toolkit/Suite
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
License:
BSD 2-clause “Simplified” License
Stability:
Stable

NGSUtils distribution

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NGSUtils support

Maintainer

  • Marcus R. Breese <>

Credits

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Publications

Institution(s)

Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA; Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, IN, USA; Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA

Funding source(s)

National Institutes of Health (AA017941, CA113001, GM088076); Indiana Biobank

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