nHLAPred specifications

Information


Unique identifier OMICS_05738
Name nHLAPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for nHLAPred

nHLAPred in publications

 (9)
PMCID: 5540609
PMID: 28767653
DOI: 10.1371/journal.pone.0180505

[…] was kept at default value of 0.35 for bepipred and at 2.38 for bcepred. the residues with scores above the threshold are predicted as b-cell epitopes. t-cell epitope predictions were carried out by nhlapred (http://www.imtech.res.in/raghava/nhlapred/) [], iedb (immune epitope database) (http://tools.iedb.org/mhci/) [] for mhc class-i binders and by propred […]

PMCID: 5368232
PMID: 28400756
DOI: 10.3389/fmicb.2017.00495

[…] the term can be defined as “the application of computer tools to handle biological information.” several computational and bioinformatics tools for prediction of antibody binders include rankpep, nhlapred, netmhc, kernel-based inter-allele peptide binding prediction system (kiss) with support vector machine (svm; bhasin and raghava, ; lundegaard et al., ). moreover, these tools use databases […]

PMCID: 5104390
PMID: 27832200
DOI: 10.1371/journal.pone.0166372

[…] were interesting outcomes from each individual algorithm of our pipeline that has been complied in the resource. for example, prkdc has 5 or more positive neoepitopes predicted using ctlpred and nhlapred, which were present in more than 800 unique cell lines ( and tables). also, there were more than 15 neopeptides found to be hla class i binders (using propred1) from recql4 and prkdc, […]

PMCID: 4603527
PMID: 26512199
DOI: 10.4137/BBI.S29466

[…] value is calculated. the parameters within the formulae are determined during the training process by back propagation. multiple papers and servers have implemented the ann method, including annpred/nhlapred, iedb, multipred,, netmhc/netmhcii,, and netmhcpan/netmhciipan.,, anns can be utilized to make both qualitative and quantitative predictions for both classes of hlas. reliable performances […]

PMCID: 4138092
PMID: 25136958
DOI: 10.1371/journal.pone.0103679

[…] is present in several pathogenic mycobacteria. furthermore, the full length peptide 121–145 as well as peptide 127–136 were also suggested to possess cd8+ cytotoxic t cell epitopes using nhlapred/compred and propred-i (). since the involvement of both cd4+ and cd8+ t cells is suggested for optimal protection against mycobacterial disease , , the use of crossreactive peptide […]


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nHLAPred institution(s)
Institute of Microbial Technology, Chandigarh, India

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