NHMMfdr statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool NHMMfdr
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Differentially methylated region detection chevron_right
Want to access the full stats & trends on this tool?

NHMMfdr specifications

Information


Unique identifier OMICS_18711
Name NHMMfdr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.6
Stability Stable
Requirements
MASS, locfdr
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Pei Fen Kuan

Additional information


http://www.ams.sunysb.edu/~pfkuan/softwares.html

Publication for NHMMfdr

NHMMfdr citations

 (2)
library_books

Species Specific 5 mC and 5 hmC Genomic Landscapes Indicate Epigenetic Contribution to Human Brain Evolution

2018
PMCID: 5817089
PMID: 29491831
DOI: 10.3389/fnmol.2018.00039

[…] for the remaining CpGs (5 mC: N = 142,304; 5 hmC: N = 140,664), P-values were transformed to z-scores. A Hidden Markov Model was used to adjust for local index of significance (aLIS) using R package NHMMfdr (Kuan and Chiang, ) with all parameters set to default with the exception of: model type set to HMM, alternative hypothesis type set to “kernel,” null hypothesis type set to empirical null wit […]

library_books

Integrating Epigenomics into the Understanding of Biomedical Insight

2016
Bioinform Biol Insights
PMCID: 5138066
PMID: 27980397
DOI: 10.4137/BBI.S38427

[…] ection (bumphunting), tunable kernel smoothing (DMR-cate), nonparametric and kernel-based method (M3D), beta-binomial model (methylSig), beta-binomial hierarchical model (MOABS), hidden Markov model (NHMMfdr), three-state HMM (MethPipe), Shannon entropy (QDMR), and a binary segmentation algorithm combined with a two-dimensional statistical test (metilene). Usually, the latest software compares wit […]


Want to access the full list of citations?
NHMMfdr institution(s)
Department of Biostatistics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Genetics and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA
NHMMfdr funding source(s)
Supported in part by NCI grants 5-P30-CA16086-34, 1R21CA134368-01A1, P05CA106991, Susan G. Komen Foundation grant KG081397, Alfred P. Sloan Fellowship (D.C.) and University Cancer Research Fund.

NHMMfdr reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review NHMMfdr