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NHPRTR specifications

Information


Unique identifier OMICS_06552
Name NHPRTR
Alternative name Non-Human Primate Reference Transcriptome Resource
Restrictions to use None
Maintained Yes

Publication for Non-Human Primate Reference Transcriptome Resource

NHPRTR citations

 (8)
library_books

Selection on the regulation of sympathetic nervous activity in humans and chimpanzees

2018
PLoS Genet
PMCID: 5908061
PMID: 29672586
DOI: 10.1371/journal.pgen.1007311

[…] q gene expression profile of ADRA2C in the brain of human and non-human primates were retrieved from the Illumina Human BodyMap 2.0 and the Non-Human Primates Reference Transcriptome Resource (http://nhprtr.org/) via AceView []. Additionally, RNA-seq data for the brain samples of human, chimpanzee, and rhesus macaque [] were examined. RPKM values for ADRA2C and its orthologues were compared. We al […]

library_books

Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host

2018
Nature
PMCID: 5843367
PMID: 29300007
DOI: 10.1038/nature25140

[…] rporated RNA-seq data from a sooty mangabey pooled tissue reference sample, and data from 14 separate tissues produced through a joint effort by the Nonhuman Primate Reference Transcriptome Resource (NHPRTR; http://www.nhprtr.org/) and the Human Genome Sequencing Center (HGSC) of Baylor College of Medicine. The NCBI process also used human RefSeq and GenBank transcripts along with other primate pr […]

library_books

Identification and characterization of a subtelomeric satellite DNA in Callitrichini monkeys

2017
PMCID: 5737874
PMID: 28854689
DOI: 10.1093/dnares/dsx010

[…] We investigated the transcription of MarmoSAT in several tissues of C. jacchus using the RNA-seq data generated by the Non-Human Primate Reference Transcriptome Resource (NHPRTR; Peng et al.). These data are publicly available at NCBI under the BioProject PRJNA271912 and include total Ribo-Zero transcriptomes for bone […]

library_books

Resequencing of the common marmoset genome improves genome assemblies and gene coding sequence analysis

2015
Sci Rep
PMCID: 4653617
PMID: 26586576
DOI: 10.1038/srep16894

[…] er, the 5,228 genes located in the filled gaps in the improved genome sequence are annotated “filled” in .We predicted 78,227 transcripts using Cufflinks from RNA-seq data of 5 organs produced by the non-human primate reference transcriptome resource (NHPRTR) after mapping them using STAR.We performed ab initio gene prediction using AUGUSTUS, which predicted a total of 32,464 genes. Among the 18,7 […]

library_books

The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection

2014
Nucleic Acids Res
PMCID: 4383995
PMID: 25593347
DOI: 10.1093/nar/gku1241

[…] ctive sampling of transcripts that encompass newly discovered genes. RNA-seq data, cheaply obtained, also offer a convenient way to obtain valuable comparative information on non-model organisms. The non-human primate reference transcriptome resource [NHPRTR, ()], for example, takes in relatives out to lemurs, enabling study of what is shared or distinct between us and our distant cousins. Similar […]

library_books

Detecting and correcting systematic variation in large scale RNA sequencing data

2014
Nat Biotechnol
PMCID: 4160374
PMID: 25150837
DOI: 10.1038/nbt.3000

[…] ts and this work validates and extends their conclusions to other efforts such as GTEx, the Epigenomics Roadmap, the human Brainspan Project and the Nonhuman Primate Reference Transcriptome Resource (NHPRTR). These metrics and internal controls complement those currently in use and create additional resolution insights into the quality of an RNA-seq dataset, further establishing RNA-seq as a relia […]

Citations

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NHPRTR institution(s)
Department of Microbiology, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, Seattle, WA, USA; National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD, USA; Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA; Institute for Computational Biology (ICB), Weill Cornell Medical College, New York, NY, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA; Illumina, Inc, San Diego, CA, USA; Feil Family Brain and Mind Research Institute (BMRI), Weill Cornell Medical College, New York, NY, USA

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