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NIA Array Analysis specifications

Information


Unique identifier OMICS_00774
Name NIA Array Analysis
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for NIA Array Analysis

NIA Array Analysis citations

 (21)
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Embryonic Stem Cell Culture Conditions Support Distinct States Associated with Different Developmental Stages and Potency

2016
Stem Cell Reports
PMCID: 4983099
PMID: 27509134
DOI: 10.1016/j.stemcr.2016.07.009
call_split See protocol

[…] Technologies). Probe intensities were obtained by taking the gProcessedSignal from the output of Agilent feature extraction software using default settings. Probe intensities were analyzed using the NIA Array Analysis tool (http://lgsun.grc.nia.nih.gov/ANOVA/).Analysis of microarray data was carried out using ExAtlas online tool for meta-analysis of gene-expression data developed by the NIA (http […]

library_books

Generation and gene expression profiling of 48 transcription factor inducible mouse embryonic stem cell lines

2016
Sci Rep
PMCID: 4858678
PMID: 27150017
DOI: 10.1038/srep25667

[…] Agilent, design ID 015087). Slides were scanned with Agilent DNA Microarray Scanner. All DNA Microarray data are available in Table S2, at GEO/NCBI (http://www.ncbi.nlm.nih.gov/geo; GSE72350), and at NIA Array Analysis, http://lgsun.grc.nia.nih.gov/ANOVA. […]

library_books

Stress Sensitivity Is Associated with Differential Accumulation of Reactive Oxygen and Nitrogen Species in Maize Genotypes with Contrasting Levels of Drought Tolerance

2015
Int J Mol Sci
PMCID: 4632777
PMID: 26492235
DOI: 10.3390/ijms161024791

[…] e the same letter in graphical representations, provided by the GraphPAD software (v.5.01, GraphPad Software Inc., San Diego, CA, USA). The data were Box-Cox transformed prior to use in PCA using the NIA array analysis tool []. We used the default settings for the analysis except for the false discovery rate (FDR) thresholddefined as 0.01. For the PCA analysis, the settings were as follows: covari […]

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Sox7 is dispensable for primitive endoderm differentiation from mouse ES cells

2015
BMC Dev Biol
PMCID: 4609079
PMID: 26475439
DOI: 10.1186/s12861-015-0079-4
call_split See protocol

[…] isolated from ES cells and XEN-like cells at day 4. DNA microarray analyses were performed using a SurePrintG3 Mouse GE Microarray 8x60K (Agilent Technologies). Microarray results were analyzed uisng NIA Array Analysis Software. Complete array data will be available on the GEO (NCBI) website. GO term analysis was performed by DAVID (http://david.abcc.ncifcrf.gov) [, ]. […]

library_books

Nr0b1 is a negative regulator of Zscan4c in mouse embryonic stem cells

2015
Sci Rep
PMCID: 5390923
PMID: 25772165
DOI: 10.1038/srep09146

[…] DNA microarray analyses were performed using a SurePrint G3 Mouse GE Microarray 8 × 60 K (Agilent Technologies). Microarray results were analyzed using NIA Array Analysis Software. Complete array data will be available on the GEO (NCBI) website. […]

library_books

Enhanced Photosynthesis and Carbon Metabolism Favor Arsenic Tolerance in Artemisia annua, a Medicinal Plant as Revealed by Homology Based Proteomics

2014
Int J Proteomics
PMCID: 4020366
PMID: 24868464
DOI: 10.1155/2014/163962

[…] were accepted as significant at P < 0.05. All values shown in the figures and tables are means ± SD. For statistical treatment and cluster analysis of protein abundance values, the web-based software NIA array analysis tool used was Sharov et al. [] available at http://lgsun.grc.nia.nih.gov/anova/index.html. This software tool selects statistically valid protein spots based on analysis of variance […]

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NIA Array Analysis institution(s)
Developmental Genomics and Aging Section, Laboratory of Genetics, National Institute on Aging, National Institutes of Health Baltimore, USA

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