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Nitime specifications

Information


Unique identifier OMICS_21612
Name Nitime
Software type Framework/Library
Interface Application programming interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.7
Stability Stable
Requirements
NumPy, SciPy, Matplotlib
Source code URL https://codeload.github.com/nipy/nitime/zip/rel/0.7
Maintained Yes

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Documentation


Maintainers


  • person_outline Ariel Rokem <>
  • person_outline Michael Trumpis <>
  • person_outline Fernando Pérez <>

Additional information


http://nipy.org/nitime/_static/Scipy2009Nitime.pdf

Nitime in publications

 (8)
PMCID: 5803915
PMID: 29415770
DOI: 10.1186/s13195-018-0346-2

[…] with an fwhm of 1.2 mm, frequency filtering of the time series between 0.01 and 0.1 hz, and regression by motion parameters and wm and csf average signal. all these steps were performed using nitime (http://nipy.org/nitime/)., brain regions identified by parcellation were considered as nodes of the brain network. the original parcellation published previously [] consisted of 101 regions. […]

PMCID: 5712990
PMID: 29238300
DOI: 10.3389/fninf.2017.00068

[…] since by definition time series are autoregressive., 5we assume to use classifiers that produce a classification score, like the probability of having a causal interaction., 6see grangeranlayzer in nitime, http://nipy.org/nitime, 7 http://scikit-learn.org , 8at the time of the competition we had developed only mbc and not cbc., 9without considering the additional feature engineering step […]

PMCID: 5671633
PMID: 29164109
DOI: 10.3389/fbioe.2017.00067

[…] causal relations among the channels (the arrows point influence direction): x1 →x2x1 →x3 and x2 →x3x3 →x4 and x5 →x4x4 →x5., x1 →x2, x1 →x3 and x2 →x3, x3 →x4 and x5 →x4, x4 →x5., the python nitime (http://nipy.org/nitime/) library was used to estimate the mvar coefficients, with order two to calculate the pdc values., twenty-nine healthy recreational runners participated in this study […]

PMCID: 5368652
PMID: 28349959
DOI: 10.1038/srep45508

[…] data of each mouse were converted to a z-score by subtracting the mean lfp and dividing by the standard deviation of the signal., power spectral density was computed using multi-taper methods of the nitime python library with a bandwidth of 1 (www.nipy.org). power was calculated in 5 s data trunks and averaged for each animal. in case of animals with implanted microdrives, one of the channels […]

PMCID: 5103253
DOI: 10.1186/s13742-016-0147-0

[…] krzysztof j. gorgolewski, a9 generating music with resting-state fmri data, caroline froehlich, gil dekel, daniel s. margulies, r. cameron craddock, a10 highly comparable time-series analysis in nitime, ben d. fulcher, a11 nipype interfaces in cbrain, tristan glatard, samir das, reza adalat, natacha beck, rémi bernard, najmeh khalili-mahani, pierre rioux, marc-étienne rousseau, alan c. […]


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Nitime institution(s)
University of California, Berkeley, Berkeley, CA, USA

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