NJplot specifications

Information


Unique identifier OMICS_04815
Name NJplot
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Stability Stable
Maintained Yes

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NJplot citations

 (2)
2016
PMCID: 4978470

[…] further used to build a multiple alignment with mafft-7.187 [15]. newick formula was obtained by submitting the mafft output file to fasttree-2.1.7 [16]. finally, the newick formula was uploaded in njplot 2.3 (http://doua.prabi.fr/software/njplot) [17] to visualize and root the corresponding phylogenetic tree using s. oralis uo5 as outgroup. this tree was named tree_9strains. a similar approach […]

2006
PMCID: 1762338

[…] program with sequence data bootstrapped 1000 times and visualized using njplot (m. gouy, laboratoire de biometrie et biologie evolutive, u. lyon, cnrs, france, url http://pbiol.univlyon1.fr/software/njplot.html)., since the sequences of the vdpvs are sabin-derived, it was possible to root the trees to the corresponding sabin sequences., the frequencies of identical substitutions relative to opv […]

NJplot institution(s)
Laboratoire de Biométrie, Génétique et Biologie des Populations, Université Claude-Bernard Lyon-1, Villeurbanne, France

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