NLStradamus specifications

Information


Unique identifier OMICS_13513
Name NLStradamus
Interface Web user interface
Restrictions to use None
Input data A protein sequence or multiple sequences, HMM state emission and transition frequencies, prediction type
Input format FASTA, TXT
Output data Predicted sequences, a table that you can export with the start and stop positions of predicted NLS, an image with the NLS boxed over a line representing the protein sequence, a graphical representation of its distribution (only applicable to posterior probability).
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Alan M. Moses <>

Information


Unique identifier OMICS_13513
Name NLStradamus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Output data The gene ID followed by the predicted sequences.
Operating system Unix/Linux
Programming languages C++, Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.8
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Alan M. Moses <>

Publication for NLStradamus

NLStradamus institution(s)
Department of Cell & Systems Biology, University of Toronto, Toronto, Canada; Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Canada
NLStradamus funding source(s)
This work was supported by a research award from the Center for the Analysis of Genome Evolution and Function (CAGEF) and by a Canadian Foundation for Innovation infrastructure grant.

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