nmrglue statistics

info info

Citations per year

info

Popular tool citations

chevron_left Data processing File format conversion chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

nmrglue specifications

Information


Unique identifier OMICS_23641
Name nmrglue
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A NMR file
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License New BSD Licence
Computer skills Advanced
Stability Stable
Requirements
NumPy, SciPy
Maintained Yes

Download


github.png

Versioning


No version available

Documentation


Maintainers


  • person_outline Jonathan Helmus
  • person_outline Christopher Jaroniec

Additional information


http://nmrglue.readthedocs.io/en/latest/index.html https://github.com/jjhelmus/nmrglue/wiki

Publication for nmrglue

nmrglue citations

 (8)
library_books

N,N Diethylmethylamine as lineshape standard for NMR above 130 K

2017
PMCID: 5821130
PMID: 29335163
DOI: 10.1016/j.jmr.2017.12.021

[…] angle setting had to be adjusted after cooling the probe, see . additional pulse sequence parameters are included in the figure captions. spectra were plotted and analyzed using python with the nmrglue [], lmfit [] and emcee [] packages., we searched for a compound with a low melting temperature, in the hope that it would provide narrow linewidths in a liquid phase. after excluding […]

library_books

Species dependent structural polymorphism of Y145Stop prion protein amyloid revealed by solid state NMR spectroscopy

2017
Nat Commun
PMCID: 5622040
PMID: 28963458
DOI: 10.1038/s41467-017-00794-z

[…] nhmfl, . all nmr experiments were carried out at magic angle spinning frequency of 11.111 khz and effective sample temperature of 5 °c. nmr data were processed in nmrpipe and analyzed in sparky and nmrglue., further data and data sets generated during and/or analyzed during the current study are available from the corresponding author on reasonable request., , electronic supplementary […]

library_books

RNA structure refinement using NMR solvent accessibility data

2017
Sci Rep
PMCID: 5511288
PMID: 28710477
DOI: 10.1038/s41598-017-05821-z

[…] nmr spectra were processed with the nmrpipe software package. peak positions from literature were transferred using ccpnmr analysis and peak intensities of well-resolved peaks were obtained using the nmrglue python package. peak intensities of the pseudo-3d experiments were fitted to an exponential recovery function according to equation ():1\documentclass[12pt]{minimal} \usepackage{amsmath} […]

library_books

Unraveling self assembly pathways of the 468 kDa proteolytic machine TET2

2017
Sci Adv
PMCID: 5384809
PMID: 28435872
DOI: 10.1126/sciadv.1601601

[…] phase and receiver phase in sofast–methyl–hmqc (heteronuclear multiple-quantum coherence) was alternated between subsequent experiments ()., spectra were processed and analysed using nmrpipe () and nmrglue () module of the python programming language (). two succeeding spectra (1 and 2, 2 and 3, 3 and 4,…, n − 1 and n) along the kinetic time were added before processing of 2d kinetic planes. […]

library_books

Reconstruction of non uniformly sampled five dimensional NMR spectra by signal separation algorithm

2017
J Biomol NMR
PMCID: 5504137
PMID: 28243768
DOI: 10.1007/s10858-017-0095-8

[…] processing software used is available free of charge at http://nmr.cent3.uw.edu.pl/software. all spectra were inspected using the sparky program (goddard and kneller) and manually pick-peaked. nmrglue python package was used for visualization purposes (helmus and jaroniec )., for the hn(ca)conh experiment (kazimierczuk et al. ), a pulse sequence with a watergate block (piotto et al. ) […]

library_books

Segmental Isotope Labelling of an Individual Bromodomain of a Tandem Domain BRD4 Using Sortase A

2016
PLoS One
PMCID: 4851411
PMID: 27128490
DOI: 10.1371/journal.pone.0154607

[…] to the ratios given by markley et al. []. nmr spectra were processed using nmrpipe [] and analysed in ccpnnmr analysis v2.1.5 []. figures containing nmr spectra were created using the python based nmrglue program []., s. aureus sortase a-mediated ligation occurs between two polypeptides, where one contains a lpxtg recognition sequence motif within a few residues from the c-terminus [, ], x […]


Want to access the full list of citations?
nmrglue institution(s)
Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, USA
nmrglue funding source(s)
Supported, in part, by the National Science Foundation (CAREER Award MCB-0745754), the National Institutes of Health (R01GM094357), the Camille and Henry Dreyfus Foundation (Camille Dreyfus Teacher-Scholar Award) and Eli Lilly and Company (Young Investigator Award).

nmrglue reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review nmrglue